Résumé
Soil fungi play a fundamental role in the cycling of nutrients and tree nutrition in forests. As mycorrhizal fungi are closely associated with their host trees and provide them essential base cations and phosphorus, we hypothesize that they actively mine soil minerals and transfer their nutritive content to their host. Therefore, mycorrhizal fungi are expected to be important colonizers of soil mineral surfaces relative to other fungal trophic guilds. To test this hypothesis, 50 μm nylon mesh bags were filled with three different mineral types (i.e. calcite, apatite and obsidian) and buried in the same soil colonized by three forest stands (i.e. beech, Corsican pine and coppice with standards). After an in situ incubation period of 29 months in the topsoil, mineral dissolution was detectable in the mesh bags, and the analysis of the fungal communities was therefore undertaken. Minerals presented a lower fungal biomass than the surrounding bulk soil and no difference between the three mineral types tested was observed. The high-throughput sequencing (HTS) approach showed that the fungal communities differed among the three forest stands, but in each case, mineral associated fungal taxa differed significantly from those in the bulk soil. To a lesser extent, fungal communities further varied between the three mineral types. Overall, trophic inference analyses suggested that two groups of plant-associated fungi, namely the ectomycorrhizal and endophytic fungi, were the major fungal mineral colonizers. Saprophytes also appeared significantly enriched on minerals comparatively to the surrounding bulk soil. Together, our data reveal at local scale that the mineral-associated fungal communities are first determined by the forest plant cover and then by the type of mineral.
Auteurs, date et publication :
Auteurs Y. Colin , M. -P. Turpault , L. Fauchery , M. Buée , S. Uroz
Publication : European Journal of Soil Biology
Date : 2021
Volume : 105
Pages : 103334
Catégorie(s)
#FORET Breuil #INRAERésumé
In terrestrial ecosystems, plant-available pools of magnesium and calcium are assumed to be stored in the soil as exchangeable cations adsorbed on the surface of mineral and/ or organic particles. The pools of exchangeable magnesium and calcium are measured by ion-exchange soil extractions. These pools are sustained in the long term by the weathering of primary minerals in the soil and atmospheric inputs. This conceptual model is the base of input-output budgets from which soil acidification and the sustainability of soil chemical fertility is inferred. However, this model has been questioned by data from long-term forest ecosystem monitoring sites, particularly for calcium. Quantifying the contribution of atmospheric inputs, ion exchange and weathering of both primary, secondary and non-crystalline phases to tree nutrition in the short term is challenging. In this study, we developed and applied a novel isotopic dilution technique using the stable isotopes of magnesium and calcium to study the contribution of the different soil phases to soil solution chemistry in a very acidic soil. The labile pools of Mg and Ca in the soil (pools in equilibrium with the soil solution) were isotopically labeled by spraying a solution enriched in 26 Mg and 44 Ca on the soil. Labeled soil columns were then percolated with a dilute acid solution during a 3-month period and the isotopic dilution of the tracers was monitored in the leaching solution, in the exchangeable (2 sequential 1 mol L-1 ammonium acetate extractions) and non-crystalline (2 sequential soil digestions: oxalic acid followed by nitric acid) phases. Significant amounts of Mg and Ca isotope tracer were recovered in the non-crystalline soil phases. These phases represented from 5% to 25% and from 24% to 50%, respectively, of the Mg and Ca labile pools during the experiment. Our results show that non-crystalline phases act as both a source and a sink of calcium and magnesium in the soil, and contribute directly to soil solution chemistry on very short-term time scales. These phases are very abundant in acid soils and, in the present study, represent a substantial calcium pool (equivalent in size to the Ca exchangeable pool). The gradual isotopic dilution of Mg and Ca isotope ratios in the leaching solution during the experiment evidenced an input flux of Mg and Ca originating from a pool other than the labile pool. While the Mg input flux originated primarily from the weathering of primary minerals and secondarily from the non-crystalline phases, the Ca input flux originated primarily from the non-crystalline phases. Our results also show that the net calcium release flux from these phases may represent a significant source of calcium in forest ecosystems and actively contribute to compensating the depletion of Ca exchangeable pools in the soil. Non-crystalline phases therefore should be taken into account when computing input-output nutrient budgets and soil acid neutralizing capacity. (C) 2017 Elsevier Ltd. All rights reserved.
Auteurs, date et publication :
Auteurs Gregory van der Heijden , Arnaud Legout , Louis Mareschal , Jacques Ranger , Etienne Dambrine
Publication : Geochimica Et Cosmochimica Acta
Date : 2017
Volume : 209
Pages : 135-148
Catégorie(s)
#FORET Breuil #INRAERésumé
Organochlorine molecules (Cl-org) are surprisingly abundant in soils and frequently exceed chloride (Cl-) levels. Despite the widespread abundance of Cl-org and the common ability of microorganisms to produce Cl-org, we lack fundamental knowledge about how overall chlorine cycling is regulated in forested ecosystems. Here we present data from a long-term reforestation experiment where native forest was cleared and replaced with five different tree species. Our results show that the abundance and residence times of Cl- and Cl-org after 30 years were highly dependent on which tree species were planted on the nearby plots. Average Cl- and Cl-org content in soil humus were higher, at experimental plots with coniferous trees than in those with deciduous trees. Plots with Norway spruce had the highest net accumulation of Cl- and Cl-org over the experiment period, and showed a 10 and 4 times higher Cl- and Cl-org storage (kg ha(-1)) in the biomass, respectively, and 7 and 9 times higher storage of Cl- and Cl-org in the soil humus layer, compared to plots with oak. The results can explain why local soil chlorine levels are frequently independent of atmospheric deposition, and provide opportunities for improved modeling of chlorine distribution and cycling in terrestrial ecosystems.
Auteurs, date et publication :
Auteurs Malin Montelius , Yves Thiry , Laura Marang , Jacques Ranger , Jean-Thomas Cornelis , Teresia Svensson , David Bastviken
Publication : Environmental Science & Technology
Date : 2015
Volume : 49
Issue : 8
Pages : 4921-4928
Catégorie(s)
#FORET Breuil #INRAERésumé
In acidic soils, the fixation of Al in the interlayer spaces of 2:1 clay minerals and the subsequent formation of hydroxyl interlayer minerals (HIMs) are known to reduce soil fertility. The resulting crystal structure of HIMs consist of complex mixed-layer minerals (MLMs) with contrasting relative proportions of expandable, hydroxy-interlayers (HI) and illite layers. The present study aims to experimentally assess the influence of particle size on the formation of such complex HIMs for vermiculite saturated with potassium (K). Based on chemical and structural data, this study reports the dissolution and Al-interlayer occupancy of three size fractions (0.1-0.2, 1-2 and 10-20 mu m) of K-vermiculite, which were obtained at pH = 3 by using stirred flow-through reactors. The Al-interlayer occupancies were ordered 0.1-0.2 mu m < 10-20 mu m < 1-2 mu m even though the dissolution rate (in mol(vermiculite) g(-1) s(-1)) increases with decreasing particle size. For fine particles (0.1-0.2 mu m), a rapid but low Al-interlayer occupancy during the transitory state and a null rate in the steady-state were evidenced and interpreted as indicating (i) a rapid but limited K+ interlayer exchange during the first step of the overall reactions and (ii) a stoichiometric dissolution of the crystal (TOT layer + interlayer) in the steady-state. By contrast, although the stoichiometric dissolution of the TOT layer is reached in the steady-state for the coarsest fractions (10-20 and 1-2 lm), the Al-interlayer occupancies continue to evolve due to the exchange of interlayer K+, which continues to progress for a longer duration. The mechanism of auto-aluminization is interpreted in the present study as multiple processes that involve (i) the dissolution of the mineral under acidic conditions, (ii) the interlayer diffusion of initial interlayer cations and their exchange with those from the aqueous phase and (iii) the fixation of interlayer aluminum. Competition between the kinetics of ion-exchange reactions and that of mineral dissolution is responsible for the above Al-interlayer occupancy order among the particle sizes (i.e., 0.1-0.2 mu m < 10-20 mu m < 1-2 mu m). Moreover, this mechanism may be the cause of complex mineralogical structures such as mixed-layer minerals, which are commonly found in the clay-size fraction of acidic soils. (C) 2016 Elsevier Ltd. All rights reserved.
Auteurs, date et publication :
Auteurs Jean-Christophe Viennet , Fabien Hubert , Emmanuel Tertre , Eric Ferrage , Valentin Robin , Liva Dzene , Carine Cochet , Marie-Pierre Turpault
Publication : Geochimica Et Cosmochimica Acta
Date : 2016
Volume : 180
Pages : 164-176
Catégorie(s)
#FORET Breuil #INRAERésumé
This study generated new insight into the effect of bedrock grain sizes on pedogenesis under identical topographic and climatic environment. The physico-chemical and mineralogical properties of two adjacent Typic Dystrochrepts (USDA, 1999) respectively developed from fine and coarse textured granites were compared. This research study was performed in the Morvan Mountains (France). Analysis of the two underlying bedrocks revealed similar chemical and mineralogical properties, with the crystal grain size being the only parameter which differed. In these soils, bedrock played the key role in the particle size fraction distribution, the main factor controlling water retention in the soils. Weathering reactions of clay minerals were more marked in the fine textured granite soil. In this soil, both clay mineral swelling and mica transformation into expansible phyllosilicates were greater compared to the coarse textured granite soil. In the clay fraction of the fine textured granite soil, there were smaller amounts of low crystallised Fe and Al minerals, with higher carbon content in the topsoil, as compared to the coarse granite soil. The exchangeable cation analysis of the fine textured granite soil revealed a higher proportion of base saturation and a smaller proportion of Al-tit than in coarse textured granite soil which could be explained by preferential leaching of Al cations. The decrease in exchangeable Al, the higher swelling of the smectitic layer and the smaller proportion of Fe and Al-oxy-hydroxides could be explained by the complexing acid conditions, which increased mineral weathering and Al leaching. The higher water retention increased the time of contact between minerals and the soil solution, and the higher carbon content in the topsoil could have enhanced the complexing acid conditions. (C) 2015 Elsevier B.V. All rights reserved.
Auteurs, date et publication :
Auteurs L. Mareschal , M. P. Turpault , J. Ranger
Publication : Geoderma
Date : 2015
Volume : 249
Pages : 12-20
Catégorie(s)
#FORET Breuil #INRAERésumé
We report the draft genome sequence of Burkholderia sp. PML1(12), a soil bacterium isolated from the Oak-Scleroderma citrinum ectomycorrhizosphere in the experimental forest site of Breuil-Chenue (France).
Auteurs, date et publication :
Auteurs Stéphane Uroz , Phil Oger
Publication : Genome Announc.
Date : 2015
Volume : 3
Issue : 4
Pages : e00798-15
Catégorie(s)
#FORET Breuil #INRAERésumé
Analysis of the 16S rRNA gene sequences generated from Xerocomus pruinatus and Scleroderma citrinum ectomycorrhizospheres revealed that similar bacterial communities inhabited the two ectomycorrhizospheres in terms of phyla and genera, with an enrichment of the Burkholderia genus. Compared to the bulk soil habitat, ectomycorrhizospheres hosted significantly more Alpha-, Beta-, and Gammaproteobacteria.
Auteurs, date et publication :
Auteurs S. Uroz , P. Oger , E. Morin , P. Frey-Klett
Publication : Applied and Environmental Microbiology
Date : 2012
Volume : 78
Issue : 8
Pages : 3020-3024
Catégorie(s)
#FORET Breuil #INRAERésumé
Pyrosequencing-based analysis of 16S rRNA gene sequences revealed a significant correlation between apatite dissolution and the abundance of betaproteobacteria on apatite surfaces, suggesting a role for the bacteria belonging to this phylum in mineral weathering. Notably, the cultivation-dependent approach demonstrated that the most efficient mineral-weathering bacteria belonged to the betaproteobacterial genus Burhkolderia.
Auteurs, date et publication :
Auteurs C. Lepleux , M. P. Turpault , P. Oger , P. Frey-Klett , S. Uroz
Publication : Applied and Environmental Microbiology
Date : 2012
Volume : 78
Issue : 19
Pages : 7114-7119
Catégorie(s)
#FORET Breuil #INRAERésumé
The plant-available pools of calcium, magnesium and potassium are assumed to be stored in the soil as exchangeable cations adsorbed on the cation exchange complex. In numerous forest ecosystems, despite very low plant-available pools, elevated forest productivities are sustained. We hypothesize that trees access nutrient sources in the soil that are currently unaccounted by conventional soil analysis methods. We carried out an isotopic dilution assay to quantify the plant-available pools of calcium, magnesium and potassium and trace the soil phases that support these pools in 143 individual soil samples covering 3 climatic zones and 5 different soil types. For 81%, 87% and 90% of the soil samples (respectively for Ca, Mg and K), the plant-available pools measured by isotopic dilution were greater than the conventional exchangeable pool. This additional pool is most likely supported by secondary non-crystalline mineral phases in interaction with soil organic matter and represents in many cases (respectively 43%, 27% and 47% of the soil samples) a substantial amount of plant-available nutrient cations (50% greater than the conventional exchangeable pools) that is likely to play an essential role in the biogeochemical functioning of forest ecosystems, in particular when the resources of Ca, Mg and K are low.
Auteurs, date et publication :
Auteurs Jérémie Bel , Arnaud Legout , Laurent Saint-André , Steven J. Hall , Stefan Löfgren , Jean-Paul Laclau , Gregory van der Heijden
Publication : Scientific Reports
Date : 2020
Volume : 10
Issue : 1
Pages : 15703
Catégorie(s)
#FORET Breuil #INRAERésumé
Sampling atmospheric particulate deposition (APD) in forest ecosystems highlights the need for methods to measure and analyze its organic and mineral repartition. We validated an organo-mineral repartition model of APD composition in open fields and below canopy with a mineral fraction, named mineral dust deposition (MDD), and particulate organic matter (POM). MDD is subdivided into soluble (S-MDD) and hardly soluble (H-MDD) fractions. To (i) monitor APD and its nutrient fluxes in forest ecosystems in the north of France and (ii) quantify the relative contribution of POM and MDD to APD, we adapted sampling materials and preparation methods that were developed for regions close to mineral dust sources. We have also compared two protocols. The ‘‘APD’’ protocol led to quick results for APD rates and POM contents. The ‘‘H-MDD’’ protocol is a treatment for soil samples that uses hydrogen peroxide, which solubilized both POM and S-MDD, and allowed detailed analyses of H-MDD. Both protocols induced a mass loss that was a maximum for the ‘‘H-MDD’’ protocol (31 ± 3%). The contribution of POM in APD in open fields (49 ± 10%) was lower than below the canopy (at least 66 ± 6%). H-MDD accounted for approximately 80% of the MDD mass and contained the largest portion of low-solubility elements (Si, Al and Fe). The fractions S-MDD and POM contained the largest portion of Ca and P (more than 70%). The two protocols were complementary and may be used successively to accurately describe APD.
Auteurs, date et publication :
Auteurs Émeline Lequy , Sébastien Conil , Marie-Pierre Turpault
Publication : Aeolian Research
Date : 2025
Pages : 9